#PEPTIDESHAKER SPECTRAL LIBRARY FULL SIZE#

SearchGUI can also be used via the command line, and be incorporated in different analysis pipelines.įor details about the command line see: SearchCLI.

A graphical user interface is the best choice for smaller projects. The main purpose of SearchGUI is to make it simpler to use multiple search engines at the same time. To start identifying peptides and proteins using SearchGUI, download the latest version, unzip the downloaded file, and double-click on the SearchGUI-X.Y.Z.jar file. To visualize and analyze the search results we recommend PeptideShaker.įor developer access to the search results we recommend the use of compomics-utilities.

To start using SearchGUI, unzip the downloaded file, and double-click the SearchGUI-X.Y.Z.jar file. SearchGUI is a a highly adaptable open-source common interface for configuring and running proteomics search and de novo engines, currently supporting X! Tandem, MyriMatch, MS Amanda, MS-GF+, OMSSA, Comet, Tide, Andromeda, MetaMorpheus, Sage, Novor and DirecTag.

#PEPTIDESHAKER SPECTRAL LIBRARY FULL SIZE#

(Click on figure to see the full size version) If you use SearchGUI as part of a publication, please refer to the most recent publication.Vaudel M, Barsnes H, Berven FS, Sickmann A, Martens L: SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.Barsnes H and Vaudel M: SearchGUI: a highly adaptable common interface for proteomics search and de novo engines.

Peptideshaker spectral library